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王霖, 黄紫弦, 尤程程, 谭顺梓, 黄利鸣, 黄益玲. 基于TCGA数据库筛选肺腺癌顺铂耐药的分子标志物及功能验证[J]. 肿瘤防治研究, 2022, 49(6): 569-574. DOI: 10.3971/j.issn.1000-8578.2022.21.1181
引用本文: 王霖, 黄紫弦, 尤程程, 谭顺梓, 黄利鸣, 黄益玲. 基于TCGA数据库筛选肺腺癌顺铂耐药的分子标志物及功能验证[J]. 肿瘤防治研究, 2022, 49(6): 569-574. DOI: 10.3971/j.issn.1000-8578.2022.21.1181
WANG Lin, HUANG Zixian, YOU Chengcheng, TAN Shunzi, HUANG Liming, HUANG Yiling. Screening of Molecular Markers of Cisplatin Resistance in Lung Adenocarcinoma and Functional Verification Based on TCGA Database[J]. Cancer Research on Prevention and Treatment, 2022, 49(6): 569-574. DOI: 10.3971/j.issn.1000-8578.2022.21.1181
Citation: WANG Lin, HUANG Zixian, YOU Chengcheng, TAN Shunzi, HUANG Liming, HUANG Yiling. Screening of Molecular Markers of Cisplatin Resistance in Lung Adenocarcinoma and Functional Verification Based on TCGA Database[J]. Cancer Research on Prevention and Treatment, 2022, 49(6): 569-574. DOI: 10.3971/j.issn.1000-8578.2022.21.1181

基于TCGA数据库筛选肺腺癌顺铂耐药的分子标志物及功能验证

Screening of Molecular Markers of Cisplatin Resistance in Lung Adenocarcinoma and Functional Verification Based on TCGA Database

  • 摘要:
    目的 探究在肺腺癌顺铂耐药过程中起关键调控作用的相关基因。
    方法 利用生物信息学方法在TCGA数据库和GDSC数据库下载肺腺癌患者顺铂敏感组与耐药组之间的差异表达基因,对差异基因进行GO功能分析和KEGG通路富集分析,构建蛋白质互作网络,并进行层次聚类分析,筛选得到关键基因并利用实时荧光定量PCR和ELISA法在细胞水平进行验证。通过siRNA沉默A549/DDP细胞中CXCL10基因的表达并检测其对顺铂的敏感度。
    结果 筛选得到178个差异表达基因,经过聚类分析最终获得肺腺癌顺铂耐药的关键基因CXCL9、CXCL10、NKX2-1以及SFTPA1。暂时选择CXCL10进行后续验证及功能实验。实时荧光定量PCR结果显示CXCL10在A549/DDP细胞中的mRNA表达量显著高于A549细胞(P < 0.001),A549/DDP细胞上清液中CXCL10蛋白的表达量高于A549细胞,均与生物信息学预测一致。MTT结果显示沉默CXCL10表达后,A549/DDP细胞对DDP的敏感度增加。
    结论 CXCL10是调控肺腺癌顺铂耐药的关键基因,下调CXCL10表达可成为逆转肺腺癌顺铂耐药的潜在靶点。

     

    Abstract:
    Objective To explore the related genes that play a key regulatory role in cisplatin resistance in lung adenocarcinoma.
    Methods Bioinformatics methods were used to download the differentially-expressed genes between cisplatin sensitive group and drug resistant group in patients with lung adenocarcinoma in TCGA database and GDSC database. GO function analysis and KEGG pathway enrichment analysis were carried out to analyze the differentially-expressed genes. The protein-protein interaction network was constructed and hierarchical cluster analysis was carried out to screen the key genes. The key genes were verified at the cell level by real-time fluorescence quantitative PCR and ELISA. Then the expression of the selected key gene in A549/DDP cells was silenced by siRNA and its sensitivity to cisplatin was detected.
    Results We screened out 178 differentially-expressed genes. After cluster analysis, CXCL9, CXCL10, NKX2-1 and SFTPA1 were regarded as the key genes of cisplatin resistance in lung adenocarcinoma. CXCL10 was temporarily selected for subsequent verification and function experiment. The mRNA expression of CXCL10 in A549/DDP cells was significantly higher than that in A549 cells (P < 0.001), and the expression of CXCL10 protein in the supernatant of A549/DDP cells was higher than that in A549 cells, which were consistent with the prediction of bioinformatics. The sensitivity of A549/DDP cells to DDP increased after silencing CXCL10 expression.
    Conclusions CXCL10 is a key gene to regulate cisplatin resistance in lung adenocarcinoma. Downregulating the expression of CXCL10 can become a potential target for reversing cisplatin resistance in lung adenocarcinoma.

     

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