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基于m5C修饰相关基因的肺腺癌预后模型的建立与验证

Construction and Validation of A Prognostic Model of Lung Adenocarcinoma Based on m5C Modification-Related Genes

  • 摘要:
    目的 基于m5C修饰相关基因构建并验证肺腺癌(LUAD)预后模型,并探讨其临床应用价值。
    方法 基于TCGA和GSE30219、GSE31210、GSE50081等LUAD数据集资料,通过单因素Cox、Lasso、多因素Cox回归分析筛选预后相关基因并构建模型,通过绘制Kaplan-Meier曲线、ROC曲线及Cox回归观察模型的稳健性和预后性能,并探讨模型与临床病理特征的相关性。
    结果 构建了由CDK1、CDKN1A、NOP2、RRM2、TCL6、TLR8、TRDMT1、YTHDF2等8个m5C修饰相关基因组成的预后模型。风险评分是LUAD患者预后的独立危险因素,其联合T分期和N分期的列线图能更准确地预测患者的预后。高风险组患者中巨噬细胞、CD4+/CD8+T细胞等浸润显著减少。LUAD组织中风险评分显著高于正常组织,且与T分期、N分期正相关。吸烟、EGFR野生型患者的风险评分显著升高。
    结论 基于m5C修饰相关基因构建的预后模型,对预测LUAD患者的预后评估具有较好的准确性和稳定性,且与患者的临床特征、驱动基因突变、免疫浸润等密切相关,可为LUAD的治疗与预后评估提供潜在依据。

     

    Abstract:
    Objective To construct a prognostic model of lung adenocarcinoma (LUAD) based on m5C modification-related genes and to explore its clinical value.
    Methods Based on the LUAD data in TCGA, GSE30219, GSE31210, and GSE50081 cohorts, prognosis-related m5C modification-related genes were screened, and the prognostic model was constructed by using univariate Cox, Lasso, and multivariate Cox regression analyses. Kaplan-Meier curve, ROC curve, and Cox regression were used to observe the robustness and prognostic performance of the model. The correlation between the prognostic model and clinicopathologic features was further explored.
    Results A prognostic model consisting of eight m5C modification-related genes, including CDK1, CDKN1A, NOP2, RRM2, TCL6, TLR8, TRDMT1, and YTHDF2, was constructed. Risk score was an independent risk factor for the prognosis of patients with LUAD, and it is combined with age, T stage, and N stage to constitute a nomogram which can accurately predict the prognosis of patients. The infiltration of macrophages and CD4+/CD8+T cells was significantly reduced in high-risk patients. The risk score in LUAD tissues was significantly higher than that in normal tissues and was positively correlated with T stage and N stage. The risk score of smoking and EGFR wild-type patients was higher than that of non-smoking and EGFR-mutant patients.
    Conclusion The prognostic model constructed based on m5C modification-related genes has shown good accuracy and stability in predicting the prognosis of patients with LUAD, and it is closely related to clinical features, driver gene mutations, and immune infiltration, which can provide a potential basis for the treatment and prognostic assessment of LUAD.

     

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