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LINC01614对肺癌A549细胞的转录组影响以及耐药相关性的研究

Transcriptomic Effects of LINC01614 on Lung Cancer A549 Cells and Relevance of Drug Resistance

  • 摘要:
    目的 研究LINC01614在非小细胞肺癌A549细胞中的生物学作用及其耐药相关机制。
    方法 采用CRISPR/Cas9技术构建敲除LINC01614的A549细胞模型。对敲除LINC01614的A549细胞进行转录组测序。对转录组差异基因MCAM和ABCC3进行基因水平的验证。对MCAM进行蛋白水平的验证。检测不同浓度顺铂作用下,敲除LINC01614后的A549细胞IC50变化。检测敲除LINC01614对A549细胞迁移能力的影响。
    结果 差异基因表达分析结果显示,敲除LINC01614后,共得到2 713个DEGs,其中上调基因1 626个,下调基因1 087个。GO分析结果显示,DEGs与细胞内信号转导、细胞黏附等有关。KEGG分析结果显示,DEGs与Wnt信号通路、TGF-β信号通路以及Rap1信号转导途径等有关。从DEGs中选择耐药相关基因ABCC3与MCAM进行验证,qRT-PCR结果显示,敲除LINC01614后,MCAM在A549细胞上的表达显著下调(P<0.05),ABCC3在A549细胞上的表达显著上调(P<0.05)。敲除LINC01614后,A549细胞中MCAM的蛋白表达量显著下降(P<0.05);A549细胞对顺铂的IC50显著上升(P<0.05);A549细胞的划痕愈合率显著降低(P<0.05)。
    结论 LINC01614可能与A549细胞的增殖、侵袭以及凋亡通路有关。LINC01614可能通过MCAM来发挥其自身的迁移能力以及通过ABCC3发挥对顺铂的化疗耐药性。

     

    Abstract:
    Objective To investigate the biological role of LINC01614 in non-small cell lung cancer A549 cells and its drug resistance-related mechanism.
    Methods The CRISPR/Cas9 technology was used to construct the A549 cell model with knockdown of LINC01614. Transcriptome sequencing was performed on A549 cells knocked down with LINC01614. We validated the transcriptomic differential genes MCAM and ABCC3 at the gene level and MCAM at the protein level, detected the IC50 changes of A549 cells after knockdown of LINC01614 under the effect of different concentrations of cisplatin, and detected the effect of knockdown of LINC01614 on the migration ability of A549 cells.
    Results Of the 2 713 DEGs after knockdown of LINC01614, a total of 1 626 genes were up-regulated and 1, 087 genes were down-regulated. GO analysis showed that DEGs were associated with intracellular signaling, cell adhesion, and so on. Meanwhile, the KEGG analysis showed that DEGs were associated with the Wnt signaling pathway, TGF-β signaling pathway, and Rap1 signaling pathway. Selection of drug resistance-associated gene ABCC3 from DEGs for validation with MCAM: qRT-PCR results showed that knockdown of LINC01614 significantly down-regulated the expression of MCAM (P<0.05) and upregulated the expression of ABCC3 on A549 cells (P<0.05). After knockdown of LINC01614, the protein expression of MCAM, was significantly decreased in A549 cells (P<0.05); the IC50 of A549 cells to cisplatin was significantly increased (P<0.05); and the scratch healing rate of A549 cells was also significantly decreased (P<0.05).
    Conclusion LINC01614 may be associated with the proliferation, invasion, and apoptotic pathways of A549 cells. In addition, LINC01614 may exert its migration ability through MCAM and chemoresistance to cisplatin through ABCC3.

     

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