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hsa-miR-133a在人食管鳞状细胞癌细胞株中的表达及其生物信息学分析

Expression and Bioinformatics Analysis of hsa-miR-133a in Cell Lines of Human Esophageal Squamous Cell Carcinoma

  • 摘要: 目的 探讨hsa-miR-133a在人食管鳞状细胞癌细胞株中的表达,并对其靶基因进行预测和生物信息学分析,为深入研究hsa-miR-133a的功能提供理论指导。方法 通过实时荧光定量PCR法,检测人食管鳞状细胞癌细胞株KYSE-150、Eca109和正常食管上皮细胞株Het-1A中hsa-miR-133a的相对表达;应用TargetScan、PicTar及miRanda预测hsa-miR-133a的靶基因,取三者预测结果的交集,并结合DIANALAB-TarBase5.0和miRTarBase两个实验证实的基因数据库,进行功能注释和通路富集分析。结果 人食管鳞状细胞癌细胞株KYSE150、Eca109中hsa-miR-133a的表达水平显著低于正常食管上皮细胞;hsa-miR-133a的靶基因显著富集在与肿瘤密切相关的AKT和p53信号通路。结论 hsa-miR-133a可能是参与调控食管鳞状细胞癌致病的靶基因。

     

    Abstract: Objective To explore the hsa-miR-133a expression in the cell lines of human esophageal squamous cell carcinoma, predict and analyze the target genes of hsa-miR-133a using bioinformatic method and to provide theoretical guidance for the further function study. Methods The relative expressions of hsa-miR-133a were detected by real-time quantitative PCR in human esophageal squamous cell carcinoma cell lines KYSE-150,Eca109 and human normal esophageal epithelial cell line Het-1; hsa-miR-133a target genes were predicted by TargetScan, the PicTar and miRanda, then combined with the confirmed gene database DIANALAB-TarBase5.0 and miRTarBase, the intersection of the first three groups of forecast results were obtained for functional annotation and pathway enrichment analysis. Results Compared with normal esophageal epithelial cells, the expression levels of hsa- miR-133a in human esophageal squamous cell carcinoma cell lines KYSE-150, Eca109 were significantly lower;hsa-miR-133a target genes were signifi cantly enriched in the AKT and p53 signal pathway closely related with tumor. Conclusion hsa-miR-133a target genes may be involved in the regulation of pathogenic of esophageal squamous cell carcinoma.

     

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